MmuALTD0016174-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:25372177-25372640:-
Coord C1 exon
chr7:25372540-25372640
Coord A exon
NA
Coord C2 exon
chr7:25372177-25372261
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
AGTGAAGCTGGGCCCTACGGCTCGGCAATCTCCTTCCCGCTCTTCTCTCCTCCAACGGCGTCCCAGCGCCCGCTGGGAGGTGCAGGTCCGAGGGCTACAAG
Seq A exon
NA
Seq C2 exon
GTTTCCCTAATTCTCTGAGTCCCCAGTTCTATGCCAGAGATGCGATTTAGCGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGCTGGGCCCTACG
R:
CCTACTGATGCTGTGTCGCTA
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: