MmuALTD0016175-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67595539-67601380:-
Coord C1 exon
chr13:67601347-67601380
Coord A exon
chr13:67601307-67601346
Coord C2 exon
chr13:67595539-67595665
Length
40 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TCCATTGATCTTCGTTTCAGGAA
3' ss Score
9.62
Exon sequences
Seq C1 exon
TGCTCAGCTCTCGAGTTGCATCGCTGACGTAGAG
Seq A exon
GTTGGTCCAGGGAGCAGCGCAGCCTGAGGCATTGTTCGAG
Seq C2 exon
GAAATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGTGGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291-3-11,4-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCTCTCGAGTTGCATCG
R:
ATTCTCCAGCATCACGTCCCT
Band lengths:
137-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: