MmuALTD0016188-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000069476 | Zfp616
Description
zinc finger protein 616 [Source:MGI Symbol;Acc:MGI:3650906]
Coordinates
chr11:73885160-73900794:+
Coord C1 exon
chr11:73885160-73885242
Coord A exon
chr11:73885243-73885255
Coord C2 exon
chr11:73896374-73900794
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TTTTGCTTTATTACTTTCAGCTT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTGTTGCTGTTTCAAAACGAGAGGTAATCATCTGTCTTGAACAAAACAAAGAACCATGGATTGTTGATGCAGAGGAAACACAA
Seq A exon
GTAAGAGAACCAG
Seq C2 exon
CTTTGTCTTGTGAACATACTGAGAATCTACTACAAATGGTGTGTACACAAAATTATTTTCAAAAAGAAATAACACAAGTATTTGGACTTAATGGTCTTTTAGACCTATATAGAAAGAAGTTTTGGGAATATAGAAGTGGTGGTGAGGAGCATGAAATATGTGATTATGAAAATTATCTGCTGGCAAAACACATCTGTTTTAATTCTGAAAAGAATAAAGGAGTTCTAGCTATTCCTGAGAGAACTCAGGCTGAGTCACTCCCATTTTTACAATTGGAGACTACTCTAGCAGAATTTTTACAAATTTTGAAATGCAACAATGTTCTACACAGGAATACAAAAACCTTAAAGAGTGACATTTGGGTGAATAAACCCACTTCCCTGAAGCATTTATCAAGTAGTATGGGATTTAACAGTACTTCAATACTTTATGAACAAAGGAGATATTGGAGAAGAGAAAAAATTACTGAATATCATCAATGTGAAAGATATTTCTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069476-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTTCAAAACGAGAGGT
R:
AGATTCTCAGTATGTTCACAAGACA
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: