MmuALTD0016245-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000059000 | Zfp799
Description
zinc finger protein 799 [Source:MGI Symbol;Acc:MGI:2443934]
Coordinates
chr17:32958723-32959119:-
Coord C1 exon
chr17:32959019-32959119
Coord A exon
chr17:32959013-32959018
Coord C2 exon
chr17:32958723-32958783
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCTCTTGATCTGTATTTTAGGAA
3' ss Score
10.59
Exon sequences
Seq C1 exon
TGTGAACTTCACCTTGGAAGAGTGGACTATGCTGAATGCATCCCAAAAGGAGCTCTACAAAGATGTGATGCAGGACACCTTGAGGAACCTGTCCTATATAG
Seq A exon
GTGAAG
Seq C2 exon
GAAACAAATGGGAACACCAAAATATTGAAAATGAGTATGAAACTCTCTGGAGAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059000-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCAGGACACCTTGAGG
R:
AGTTTTCTCCAGAGAGTTTCATACT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: