MmuALTD0016249-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:50862544-50865348:+
Coord C1 exon
chr7:50862544-50862644
Coord A exon
chr7:50862645-50862687
Coord C2 exon
chr7:50865156-50865348
Length
43 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
ACTTTCTGGTGTCTTCGTAGATT
3' ss Score
9.66
Exon sequences
Seq C1 exon
TGGATTCTGAACACTGGGGAATCCTCAGCGTCCACCCGGCGTGCCGCGTGCAGAGCTCTCTGAAGTGGCTGCGCAGGAAGGATGCTGGCTGCTGAGCGCTG
Seq A exon
GTTTGTGTTGAGTGATGACTGAGGCAGCTGTAGGGGGGTGCCG
Seq C2 exon
ATTCCTGAGTCAGGCCAAGACATTCATGCTGCTGACTTTCTAGCACAACCAAGCTGAGTTCTGCCTGTCAGCTCTACCCAAAGGCTCCACATGCTCACCTGAATCCTGAGGGAATCCAGACATGGCTGCTGACATGAATTTCTGTCAGAAGCTCCAGAGACTGGGAACAGAGGAGCAGGACGGGCCGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTCTCTGAAGTGGCTGC
R:
AGCCTTTGGGTAGAGCTGACA
Band lengths:
136-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: