Special

MmuALTD0016255-2/4 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81710075-81717642:+
Coord C1 exon
chr8:81710075-81710252
Coord A exon
chr8:81710253-81710257
Coord C2 exon
chr8:81713566-81717642
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
3' ss Seq
ATTGCTTCTTCCCCTGGCAGGTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCTGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACAGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGCGAGCATCGCCTGGGCAACCACTACAAGTGTGAGCAGTGCGGCTACCTGTCTAAGACGGCCAACAAGCTCATCGAGCACGTGCGCGTGCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTTAACCTGCACAAGAAGCTGAAGCACGCCCCCCGCCAGACCTTCAGCTGCGGAGAGTGCCTGTTCAAGACCACACACCCTTTTGTCTTCAGCCGCCACGTGAAGAAGCACCAGAGTGGAGACGGCCCTGAGGAGGACAAGAAAGGCCTGAGTCCAGCCTCCAGAGAGCCAGCTGGCCCTGGAGCCCCGCTCCTGGTTGTGGGGGGTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-16-21,17-21,18-21,19-21-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.212
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7),PF139091=zf-H2C2_5=PU(0.1=0.0)

							
A:
NA

							
C2:
PF139091=zf-H2C2_5=PD(91.7=8.0),PF134651=zf-H2C2_2=WD(100=9.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000113199





     
                   









    
Main Skipping Isoform:
ENSMUSP00000120562





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000092870, ENSMUSP00000114208
          









    
Other Skipping Isoforms:
ENSMUSP00000096214, ENSMUSP00000119511, ENSMUSP00000120913
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr4:146686133-146686134 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr17:12737476-12737477 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr4:32339961-32339962 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAGAAATGCCACACTGTCCCC

				
R: 
GTCTTGAGGTGGCACTCCATG

				
Band lengths: 
95-100

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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