MmuALTD0016267-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000072623 | Zfp9
Description
zinc finger protein 9 [Source:MGI Symbol;Acc:MGI:99210]
Coordinates
chr6:118415853-118416938:-
Coord C1 exon
chr6:118416861-118416938
Coord A exon
chr6:118416846-118416860
Coord C2 exon
chr6:118415853-118415916
Length
15 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AATCTTGATTCGTTTTGTAGATA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTATCGTGTGGTTAAGCCAAGTGTGATTGCAAAGTTGAAGAAAGGAAAAGAGCCATGGCCATTAGAAGAATTTTTCC
Seq A exon
GTAAGAGCCGTGGTG
Seq C2 exon
ATAAGCGGCGGACCGCTCACGACCCCAGAGCCAAACATCAGGAGCAACAGGCTGGAAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072623-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGAAAAGAGCCATGGCC
R:
CTTGCATTTCCAGCCTGTTGC
Band lengths:
103-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: