MmuALTD0016272-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000074282 | Zfp94
Description
zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
Coordinates
chr7:24314350-24316421:-
Coord C1 exon
chr7:24316361-24316421
Coord A exon
chr7:24316344-24316360
Coord C2 exon
chr7:24314350-24314411
Length
17 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TGGCTTCTCTCCTTCCACAGCCT
3' ss Score
10.2
Exon sequences
Seq C1 exon
ATATCATCGCACTGATAGGGTCTCAGCGCGTGGCTCAGTCAGCCTCCTGCCTCAGCATCCG
Seq A exon
GTGTGTTGCGATGACAG
Seq C2 exon
CCTGATCTCTCAACAAGGACTGAGTGGAAGGTGAGGTCCTGACTCCTTCAGCAAGGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074282-1-1,2-1,3-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACTGATAGGGTCTCAGC
R:
TGAAGGAGTCAGGACCTCACC
Band lengths:
105-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types