MmuALTD0016278-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000033972 | Zfp944
Description
zinc finger protein 944 [Source:MGI Symbol;Acc:MGI:2442394]
Coordinates
chr17:22496407-22498409:-
Coord C1 exon
chr17:22498309-22498409
Coord A exon
chr17:22498135-22498308
Coord C2 exon
chr17:22496407-22496491
Length
174 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTCTCTTTCCTTCCTATTAGTTA
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCGTTAGCGCTGTCACGTGACCGGAACCGTGGTGTCCTGGGCGGGGCTAGGGGAGCCGCTCCAAAGATCGTGGCCAGAGACTGGGAACCGCGTCCCCTTAG
Seq A exon
GTACCTGTTGGAGCCAAGTTGTCTCTACTCCCACTGCGGGCGACTTACCCTGGCCTGGTTCTTTTCGAAGGCCGTAACTCTCCTCAGATGCGGTTTCCTGTGCTGACCTGGGAGAGTCAGCCATCAGCCGCGCAGCCGGGGGCACCGCAGCCCGGCGGCCCTGGAACCTTCCAG
Seq C2 exon
TTATGTTAATGGGCACCTGAGTTAGCAGTTTATCCGGAGTTTCTTTGAGACCTAATAAGGTCTTGGCCAGCCTGGTATGCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033972-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGCGCTGTCACGTGACC
R:
CATACCAGGCTGGCCAAGAC
Band lengths:
178-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: