MmuALTD0016328-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98613612-98615555:-
Coord C1 exon
chrX:98615498-98615555
Coord A exon
chrX:98615485-98615497
Coord C2 exon
chrX:98613612-98614291
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCCCCTCTTCCGATCTGCAGCCC
3' ss Score
9.44
Exon sequences
Seq C1 exon
GAGTGGGCTCTGGAGATAGGGCGGGCACGGGTGTGACGGGGCCAGGCTCTTGAGCCAG
Seq A exon
GTAAGGAAAGCAG
Seq C2 exon
CCCATACCCAGCCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCCCCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCTGGAGGAGTTCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGAACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACCAGGGTGTCAAACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCTAGTCCCCCTTCACCTGAGGGGCTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-2-8,3-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGCTCTGGAGATAGGG
R:
ATGGGTCAAATGGACTGGGGA
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: