MmuALTD0016331-1/4 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126625678-126645160:-
Coord C1 exon
chr4:126645060-126645160
Coord A exon
NA
Coord C2 exon
chr4:126625678-126625723
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CCTCCCTCTCTCTTTTTCAGTTT
3' ss Score
12.9
Exon sequences
Seq C1 exon
GGGGCCGAGAGGGGCCGCGGCCGCCGCGCCGGGAGCCGCCGCGGTTCCGAGCGGGGCCCAACATGGCGGAGCGGGAGGTGGAGACCGGCCCCCGAAAGAGG
Seq A exon
NA
Seq C2 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF047807=DUF629=PU(24.4=76.9)
A:
NA
C2:
PF047807=DUF629=FE(36.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: