MmuALTD0016370-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138558116-138559148:+
Coord C1 exon
chr5:138558116-138558216
Coord A exon
chr5:138558217-138558235
Coord C2 exon
chr5:138559064-138559148
Length
19 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
CCTGTCTCTGTTCTCTTCAGTGC
3' ss Score
10.53
Exon sequences
Seq C1 exon
GCTGCTCCCCCTCCAGAGGGGCGGGGCTCTGACGCGCTTCCGGTGGTGCTGTCGTTCAGCCGCTGTGAGGATTCCAGACTCCAAAGCGGTTCTGAGTCACG
Seq A exon
GTGAGCCTGCGAGTCCCAG
Seq C2 exon
TGCTGTAATTACAGGTATGCACCACCACGACTTCAGCTTGGAGTTTCCAAGTGCAGAGTGTCTTAAGGGCATTATCTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCCAGACTCCAAAGCGG
R:
TGCCCTTAAGACACTCTGCAC
Band lengths:
104-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: