MmuALTD1000148-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000394 | Gcg
Description
glucagon [Source:MGI Symbol;Acc:MGI:95674]
Coordinates
chr2:62478555-62480568:-
Coord C1 exon
chr2:62480465-62480568
Coord A exon
chr2:62480403-62480464
Coord C2 exon
chr2:62478555-62478716
Length
62 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTAATCACTTCCACTCACAGATC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GCAGAAAAAAAAATGAAGACCATTTACTTTGTGGCTGGATTGCTTATAATGCTGGTGCAAGGCAGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAACCCCAG
Seq A exon
GTACTGAACAGTAGTCTGGTCTGTCACTGTGGTTATAATAAAATCTGTGAGAACCGTGATTG
Seq C2 exon
ATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGGACCCTGATGAGATGAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTGGTTGATGAACACCAAGAGGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000394-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012315=Hormone_2=WD(100=50.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACAGAGGAGAACCCCAG
R:
CGGGAGTCCAGGTATTTGCTG
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types