MmuALTD1000230-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77951305-77954067:+
Coord C1 exon
chr11:77951305-77951444
Coord A exon
chr11:77951445-77951528
Coord C2 exon
chr11:77953408-77954067
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ATCATTCATTCTTATTTCAGGAC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTAGAGATGAGGAATGTTCCCCTCACCTAAGCCTTCCCAGAGTTGACAGGATTCTGTATGAACCGGATGTGGAGCCAGAATCTACTGGCCTTTCCTTGGCAGTTAAGGATCTAGGGAGTCTAGTGGGCCACAAGCAGAAG
Seq A exon
GTGAGTCATCTCTTCAGTGACGTGGTTAAAAGAGTGAATATAATCAATAGCAGAGCAATCTATACTGCTGACAAGAGACAGGAA
Seq C2 exon
GACTCTCCTCAGAGGCTCCGATCACGGGGGAAGGTCATGCCACGGGCATCAGGGAGACGGATGGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTGCTCAACCACCACCCACTTCTGGAAGAATTTCTTCAAGAGGGGCTAGAAAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCCCGTCTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-7-4,8-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.946
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGAGTCTAGTGGGCCAC
R:
GTTGAGCAGCTTGAGGGTAGG
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types