MmuALTD1001047-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89955936-89973899:-
Coord C1 exon
chr16:89973794-89973899
Coord A exon
chr16:89973675-89973793
Coord C2 exon
chr16:89955936-89956107
Length
119 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
GTCTCTATCTGCTCTGACAGGTA
3' ss Score
9.8
Exon sequences
Seq C1 exon
GAAGAGAACAAAGGTTCCCAGGTGCCTGGCCTTGAGAGCCCAGAGAAGGTCTGAATCACAAGTCTGAGCTTTCAGCAAGGCGTGTGGTTGCGTGGCCGCCGAGAAG
Seq A exon
GTAAAAGTCAGATACTGACAGCCTAGCAGCGCTGGGGGCCCCTAAATGAGACATTGTTCCTCTTGGCGACCACCACGCACTGGAGGATGGAGGCTAGCTTTGGGGGTTCAGGTGATGCG
Seq C2 exon
GTAGAACCATTGTGGACTGAAACCCACCTTTCCAGATCTGAAAGGAAGACTGAGGAAGAGGAAGGGAGGGGACAGTCCCGGAGACAATTCTAGTCCCTCACTCAGGACTTGAGCAGCGCCTTCAGATGGCACCTTTGGAGATCTTGACCAAGGCTCTTCTGTTTGGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGAGAGCCCAGAGAAGGT
R:
GCCAAACAGAAGAGCCTTGGT
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types