MmuALTD1001214-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000002944 | Cd36
Description
CD36 antigen [Source:MGI Symbol;Acc:MGI:107899]
Coordinates
chr5:17828775-17829485:-
Coord C1 exon
chr5:17829456-17829485
Coord A exon
NA
Coord C2 exon
chr5:17828775-17828984
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TTATGACCTCTTTCTAATAGTAG
3' ss Score
4.44
Exon sequences
Seq C1 exon
CTCATACATTGCTGTTTATGCATGAATTAG
Seq A exon
NA
Seq C2 exon
TAGAACCGGGCCACGTAGAAAACACTGTGATTGTACCTGGGAGTTGGCGAGAAAACCAGTGCTCTCCCTTGATTCTGCTGCACGAGGAGAATGGGCTGTGATCGGAACTGTGGGCTCATTGCTGGAGCTGTTATTGGTGCAGTCCTGGCTGTGTTTGGAGGCATTCTCATGCCAGTCGGAGACATGCTTATTGAGAAGACAATCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002944-25-15,26-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0113016=CD36=PU(21.4=70.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACATTGCTGTTTATGCATGA
R:
CCTTTTGATTGTCTTCTCAATAAGCA
Band lengths:
239-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types