MmuALTD1002018-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72360651-72372211:-
Coord C1 exon
chr5:72372098-72372211
Coord A exon
NA
Coord C2 exon
chr5:72360651-72360758
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
3' ss Seq
TTTTGTTTTTTGTTTTTCAGACT
3' ss Score
10.98
Exon sequences
Seq C1 exon
CACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACCAGCGGGCTCTGCGTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGGCGCATTGCA
Seq A exon
NA
Seq C2 exon
ACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-14-10,15-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGATGACTGGAGCGA
R:
CGTACCCATCACACAAGAGGC
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types