MmuALTD1002504-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000006574 | Slc4a1
Description
solute carrier family 4 (anion exchanger), member 1 [Source:MGI Symbol;Acc:MGI:109393]
Coordinates
chr11:102360147-102360568:-
Coord C1 exon
chr11:102360566-102360568
Coord A exon
chr11:102360531-102360565
Coord C2 exon
chr11:102360147-102360220
Length
35 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ACCGGCCATTGGGTTTTCAGCTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTG
Seq A exon
GTAAGAGGCTACCAGCTGGTGGCTTAGCTAAGCAG
Seq C2 exon
CTCTTCCCACAGAGCAAACAGCCACAGACTACGTCCCCAGCAGTACCTCCACACCGCACCCAAGCTCCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006574-10-8,11-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.880
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types