MmuALTD1002511-5/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75547233-75548221:+
Coord C1 exon
chr1:75547233-75547310
Coord A exon
chr1:75547311-75547532
Coord C2 exon
chr1:75547944-75548221
Length
222 bp
Sequences
Splice sites
5' ss Seq
CATGTTAAG
5' ss Score
-13.06
3' ss Seq
CCACTCTCCTGCACCTCCAGTTC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCTCTGGGTCCAGATGTAGAAGAGGAAGATGATGACTTGGGCAAGACCTTGGCT
Seq A exon
GTGAGCAGGTTTGGGGACCTCATCAGCAAGACCCCGGCCTGGGACCCCGAGAAGCCTAGCCGCAGCTACAGCGAGCGGGACTTTGAGTGTGGGTAGCCTGGGGACCCCTAGCACCCCAGCCTTCACCACCATCACCTTCATCGCCACCATTACTGCGCTCACCTCCGGCTTGATCACTCAGTGTCATCCTGTGCTGGACGCTGTGCTGGGCCACCATGCCAT
Seq C2 exon
TTCACCGGCACACATCCCACCACACCCATCACCCGCTCTCAGCCCGCCTGCCTCCACCCCACAAGCTTCGGCGACCGCCCCCCACCTCTGCTCGGCACACCAGGAGGAAGAGGAAGAAAGAGAAAACCTCTGCTCCCCCATCAGAAGGGACACCCCCTATCCAGGAGGAGGGGGGAGCTGGAGCAGAAGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGGGAGAGTCTGAGGCAGAGCCTGTGGAGCCTCTACCCCCAGGTCCCCCACAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-4-11,5-11,6-11,7-11,9-11,11-11-5/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTGGGCAAGACCTTGG
R:
CTTTGCTTTCTGTGGGGGAC
Band lengths:
301-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types