MmuALTD1003319-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121759338-121764121:+
Coord C1 exon
chr9:121759338-121759438
Coord A exon
chr9:121759439-121759506
Coord C2 exon
chr9:121762619-121764121
Length
68 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTGTCTCTTGGCCCCACAGTTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
AGCAGCGTTCCGCAAGCCGAGCTGCATCTTCCCAGCGCCGAGGCTGCGCGGAGGGCCCCTCGGCCGGGCCTGGGCCTCTGGCCCCCACCCGGCTGTTCCAG
Seq A exon
GTAGGTCATCTGAAAGGCTTCCGTCGTTGCGGCGGTTGCTCGGAGGTTCTGCAGCCAGAGGCCCCCAG
Seq C2 exon
TTGCTGGTTGAGAAGACGACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGCACTTCGCCTGCTTGATGGGCCGCCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCTAGTGCTGGTGCCTCAGCATAGCGTGTTCCCCGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTCCACTCGCTCTTCACACAGAACAAGCAGCTGCAGCGGGTCGAGCTATCTCTGGAGGCACTCGCGCCCAGCGGCCTGCAGCAGATCCTCAACTTCATCTACACGTCCAAGCTGCTCGTGAACGCGGCCAACGTGCACGAGGTGCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATCGCGGCCTCCTGCCAGGAGCTGCTGGACGCTCGATCCTTGGCGCCCTCGGGCCCTGTGGCCCTGGCACAGCCTGCCACCAGCTGTGCTCCGGTGCCTCCACCACCCTACTACTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=WD(100=22.0),PF0334410=Daxx=WD(100=44.9),PF138941=zf-C2H2_4=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCGAGCTGCATCTTCC
R:
CCCATCAAGCAGGCGAAGTG
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types