MmuALTD1003328-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18302686-18303836:-
Coord C1 exon
chr16:18303683-18303836
Coord A exon
NA
Coord C2 exon
chr16:18302686-18302790
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
CTGGCCCTCTGTTCTTCTAGACA
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGACGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGC
Seq A exon
NA
Seq C2 exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATGTACAGCCAATTCTGAACAAGTATGCAGCTGTGTGTGTCCGCTGTGCCACCTATGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-30-30,31-30-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.8=100)
A:
NA
C2:
PF057427=NRDE=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCCTTGTCACTCAGCTC
R:
GTACATACTCCTGGCCCTGGT
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types