MmuALTD1004686-5/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14200695-14201075:-
Coord C1 exon
chr16:14201011-14201075
Coord A exon
chr16:14200969-14201010
Coord C2 exon
chr16:14200695-14200867
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CATTGCCCTGTCCTTGGCAGGCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
AGAAACAGGCGGCCACCAAGTCGCTGAAGCAAAAGGACAAGAAGCTAAAGGAGGTCCTGCTGCAG
Seq A exon
GTGGAGGATGAGCGCAAGATGGCAGAGCAGTACAAGGAGCAG
Seq C2 exon
GCAGAGAAAGGAAACACCAAGGTCAAGCAGCTGAAGAGGCAGCTGGAAGAGGCAGAGGAGGAGTCCCAGCGCATCAACGCCAACCGCAGGAAGCTGCAGCGGGAGCTAGATGAGGCCACAGAGAGCAATGAGGCCATGGGCCGTGAGGTGAACGCCCTCAAGAGCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-67-69,68-69,69-69,70-69,71-69-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAAGTCGCTGAAGCAAA
R:
CGTTGATGCGCTGGGACTC
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types