MmuALTD1005667-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020387 | Jade2
Description
jade family PHD finger 2 [Source:MGI Symbol;Acc:MGI:1924151]
Coordinates
chr11:51818497-51821196:-
Coord C1 exon
chr11:51821079-51821196
Coord A exon
NA
Coord C2 exon
chr11:51818497-51818628
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TAACTCTTTCTCCAACACAGAGC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTCAGGAGCAGATATTCCATCTACAGATGAAACTTATTGAGCAAGACCTTTGCAGAG
Seq A exon
NA
Seq C2 exon
AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAGAAAGTGAAGGCTGGGCCCGAGTCTGTGCTGGGGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020387-39-21,41-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGGAACCTGTGCTACATGGT
R:
CTGCCCCAGCACAGACTCG
Band lengths:
246-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types