MmuALTD1006468-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68385103-68386826:-
Coord C1 exon
chr11:68386610-68386826
Coord A exon
NA
Coord C2 exon
chr11:68385103-68386184
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CGGCTCCCCTCTCTCCGCAGGCG
3' ss Score
13.15
Exon sequences
Seq C1 exon
GGCGGCCGCGTCGTCACTCGGGAGGAAGAGGCGGCGGCGGTGGCGGCCGGGGCCGGGGCTGGGGCAGCGGCGGCCGCGCCGGGCATGGAGCTGGCAAGCCCGCGTTGAGACAGGACGCTCTTGCTAGCCGCCAGCGAGAGGCTCTCTGCAGTCCGGCGCGCGGGCTCCCCGGCTTGGGCCAGGCAAACTTTTCTTTCTCTTTTGCCATCACTTAGAG
Seq A exon
NA
Seq C2 exon
GCGCCTGGTGCGGCGGGCGAACCGACTCCTTGGCGCGGCGGGGCCGGGGCAAGCTGGCCACAGCATGATGCGCGCTGTGTGGGAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTCGGATGAGAATGGACACCCGCGCCGCTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCCGGCGCGCTACTGCGTGGTGAGCGAGCGTGGTGAAGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTCGGATCCCAAGAAAGCGCACCCGCCCGCCTTCCTCACCGACCTCAATAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTGACGCTCACTCTGTCGCTCGGCAAGAAGTTTGAGGTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902-4-3,5-3,6-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAGGACGCTCTTGCTA
R:
TCCGAGCAAGGATCAGGCTG
Band lengths:
304-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types