MmuALTD1006481-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67099600-67100968:+
Coord C1 exon
chr11:67099600-67099803
Coord A exon
chr11:67099804-67099844
Coord C2 exon
chr11:67100798-67100968
Length
41 bp
Sequences
Splice sites
5' ss Seq
GACGCACTG
5' ss Score
-7.63
3' ss Seq
CCACACGCTTTGCCTTTCAGGCC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTGGAACGCAGAGCCAACCTCCTGCAGGCTGAGGTGGAGGAGCTGCGGGCCACGCTGGAGCAGACGGAGAGGGCCCGGAAGCTGGCAGAGCAGGAGCTGTTGGATTCGAATGAGAGGGTCCAGCTGCTGCACACCCAG
Seq A exon
GTGAGGGCAGGAGGATTGGGGTGTGAGGGTCCACCCCAGAC
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGAGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATTCAGAAACTGGAGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-51-47,52-47-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGCTGTTGGATTCGAA
R:
CCGTCTGCTCCAGGTTCTTCT
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types