MmuALTD1007774-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:59691452-59771746:-
Coord C1 exon
chr14:59771643-59771746
Coord A exon
NA
Coord C2 exon
chr14:59691452-59691540
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGCAGGT
5' ss Score
0.34
3' ss Seq
TGACTTGTGTTTTCTTGCAGGCA
3' ss Score
11.69
Exon sequences
Seq C1 exon
TTCAGTCACCTGGCGGTGTGGGGAAGCATGCTGATCTGGTTGGTGTTCTTCGGTGTCTATTCAACCATCTGGCCGACCATCCCCATTGCTCCTGACATGAAAGG
Seq A exon
NA
Seq C2 exon
GCAACTATGGTCCTGAGCTCTGCGTACTTCTGGTTGGGATTGTTCCTGGTTCCGACTGCGTGTTTGATTGAAGACGTGGCGTGGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-70-60,71-60-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(25.0=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGGTGTTCTTCGGTGT
R:
TCCCAACCAGAAGTACGCAGA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types