MmuALTD1008096-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30419054-30480894:+
Coord C1 exon
chr15:30419054-30457842
Coord A exon
NA
Coord C2 exon
chr15:30480782-30480894
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTCGGTGTGTTTCTTTCAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
TTTAATTCACCCAGGAGCCAACATCGAGAATTGGTCTGAGAATCTTATTTTGTCATCTGTGCTTTTGGTTGATGCTGTTTTTCTTTTCGCTCTGTTTCTTCAGATTAAAATAAGGATAGCTAAAAGATGCAGGTACAAATCTGGGGCAAAGGAAAGAAAGAGTGGAAAACTAGGATTTGCTGTGCTGGCTAGTGGGAGGGTCCTTTTGTGATGAAATGTTGCATAAATAATGCCGGTGGGGGTCTAAATTCACTGTTGCCATGGAGACCTTTGTGCCTGGCTGAACTCTATTCTTTTCTCTTTTAAGACAGCCACCACTAGGCTTGTGCTATCTGATGCATCCCGCTTTGCTTTCGCTGAACACTGTTTGCTAGTGGAAGCAGAAATTAGAGTGTGGAAATTGCGCATCCTGACTTTTTTTCTGGACCACTCTTCTCCGCCTTCTTGGATTTTGAGCTCCTCCGCTTGCTTTTAGCCTTCTTTCCAGGAGGGAGGAGCAG
Seq A exon
NA
Seq C2 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTTGGCTCGGAGACAGGAAGCATGAGCAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-14-10,15-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.459
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGCCTGGCTGAACTCT
R:
CGGGTCAGCCTTTCAAACTGT
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types