MmuALTD1008151-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022283 | Pabpc1
Description
poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
Coordinates
chr15:36596964-36605896:-
Coord C1 exon
chr15:36605840-36605896
Coord A exon
NA
Coord C2 exon
chr15:36596964-36597094
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGAGTAGGC
5' ss Score
0.41
3' ss Seq
TAGAGTGTCTGTTGTTCTAGGTG
3' ss Score
6.86
Exon sequences
Seq C1 exon
GGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGA
Seq A exon
NA
Seq C2 exon
GTGAACGGCTGTTTCCTCTTATCCAAGCCATGCACCCTTCTCTTGCTGGTAAAATCACTGGCATGCTGTTGGAGATTGATAACTCAGAATTACTTCACATGCTCGAGTCTCCAGAGTCTCTCCGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022283-13-45,14-45,15-45-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
A:
NA
C2:
PF0065813=PABP=FE(59.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGTACGCATCATGTGG
R:
TTGAGCGGAGAGACTCTGGAG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types