MmuALTD1008372-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022445 | Cyp2d26
Description
cytochrome P450, family 2, subfamily d, polypeptide 26 [Source:MGI Symbol;Acc:MGI:1923529]
Coordinates
chr15:82790970-82791474:-
Coord C1 exon
chr15:82791424-82791474
Coord A exon
chr15:82791333-82791423
Coord C2 exon
chr15:82790970-82791157
Length
91 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
AAGAGATCCTATCTATCCAGGCC
3' ss Score
3.4
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATAAGAACCTGCGCATAGTG
Seq A exon
GTGATTGACCTGTTCATGGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTCATGATCCTGCATCCAGATGTGCAGC
Seq C2 exon
GCCGTGTCCACCAGGAAATCGACGAGGTCATAGGGCACGTGCGGCATCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACAAACGCGGTCATTCATGAGGTGCAACGCTTTGCAGACATCGTCCCAACAAATTTACCACATATGACATCCCGAGACATTAAATTCCAAGACTTCTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022445-15-10,16-10,17-10,18-10-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCCTGAGAGCAGCTTC
R:
GACGATGTCTGCAAAGCGTTG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types