MmuALTD1008416-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97766762-97767264:-
Coord C1 exon
chr15:97767174-97767264
Coord A exon
chr15:97767151-97767173
Coord C2 exon
chr15:97766762-97766974
Length
23 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGC
5' ss Score
6.17
3' ss Seq
CTTTCCTCCCCACATCACAGGTC
3' ss Score
9.01
Exon sequences
Seq C1 exon
CTAGTGTGTGTACAAAGGTGGACATGCCTTCAGGACATGGGTAGTGAGGTGGGGCCGAATTCCAGCCAGAACTGAGAAGAGCCCCATCGTT
Seq A exon
GTGAGTTGAGTGGAGACCCCTAG
Seq C2 exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGTTGAAGAGAATGCACCGTCCCCGCTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCCAGCTGCATCCAGGGACTCCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-4-10,5-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGCCTTCAGGACATGGG
R:
CACCTGCCAGTGGTTCTCAC
Band lengths:
104-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types