MmuALTD1008930-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33427194-33434974:+
Coord C1 exon
chr16:33427194-33427250
Coord A exon
chr16:33427251-33427329
Coord C2 exon
chr16:33434626-33434974
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GCCAAACTTGGTCTTTCTAGGCA
3' ss Score
6.09
Exon sequences
Seq C1 exon
GCATTGGATGGCACAAGTGACTGAGAGGATCCCGAGAGTTTCCGGGGCCTGTGAAAG
Seq A exon
GTAGAAACTCAACCATGATTTCTTTCTCAACTCAACAGCATTCCCTTCCTTGAAGTCTTCGTTTTTACTTCAGCCTCAG
Seq C2 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCCGCCGTGTCTGGAGAACTGCAGGAGTCAGTACTTCAAGATCGAAGTTTGCCTCACCAGGAGATCCTTGCTGCAGACGAAGTGTTACAAGAGAGTGAAATGAGACAACAGGATATGATATCCCATGATGAACTCATGGTCCACGAGGAGACAGTGAAAAATGACGAAGAGCAGATGGACACCCACGAGCGGCTTCCCCAAGGACTGCAGTATGCACTCAATGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-19-5,20-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.527
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCCCGAGAGTTTCCG
R:
ACTCCTGCAGTTCTCCAGACA
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types