MmuALTD1009960-3/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024173 | Tpsab1
Description
tryptase alpha/beta 1 [Source:MGI Symbol;Acc:MGI:96943]
Coordinates
chr17:25344651-25345215:-
Coord C1 exon
chr17:25345148-25345215
Coord A exon
chr17:25345050-25345147
Coord C2 exon
chr17:25344651-25344916
Length
98 bp
Sequences
Splice sites
5' ss Seq
ACCATGAGT
5' ss Score
1.22
3' ss Seq
TGAATATCTCTTCTCTTTAGGGA
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTCCAGCTATGACACGAGAAGGCATTGTGGGGGGACAGGAGGCACATGGGAACAAGTGGCCCTGGCAG
Seq A exon
GTGAGCCTGCGTGCCAATGACACCTACTGGATGCATTTCTGCGGTGGCTCCCTCATCCACCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
Seq C2 exon
GGATGTTGCTGACCCCAACAAGGTCAGAGTACAGCTCCGTAAGCAGTACCTCTATTACCATGACCACCTGATGAATGTGAGCCAGATCATCACACACCCCGACTTCTACATCGTCCAGGATGGGGCAGACATTGCCCTGCTGAAACTCACAAACCCTGTGAACATTTCTGACTATGTCCACCCTGTCCCCCTACCTCCTGCCTCAGAGACCTTCCCCTCAGGAACGTTGTGCTGGGTGACAGGCTGGGGTAACATCGACAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024173-1-1,2-1,3-1,4-1,5-1-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=83.9)
A:
NA
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACGAGAAGGCATTGTGG
R:
ACGATGTAGAAGTCGGGGTGT
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types