MmuALTD1010078-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024269 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25136037-25141637:-
Coord C1 exon
chr18:25141521-25141637
Coord A exon
chr18:25141503-25141520
Coord C2 exon
chr18:25136037-25139139
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGA
5' ss Score
3.87
3' ss Seq
ACTCTATTTGTGCCTTACAGCAA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GAAATGAAGACCACCAGCTAGAGAAGCCTCACTTTGACTGTCGCAGTGCAATATTTGAGCTGGATTCATGCAATGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGAAACCTG
Seq A exon
GTAAAGATCATTTCCAAA
Seq C2 exon
CAATGGTTCAGTATGTACAAACCCATCACCTACAACACAAGCCTGCTCACAGAAGAGTCCGACAACTTTGTGAACAAGCTAGACCCCAGCAAAGTGTTCAAGAGCAAGAACAAGATTTTAATCCCAAAAAAGAAAGGGCCTGTACCACCTGCCAGTGGTCAGAAAGGGCCTGGGCCCTTACCTCCTCCTACCTCTAAGCCTACCACAGGCTCTGGAAATCCTGTCCGAAAATAAGCATTCTATCACCTCAGTAATATCCAGACACAGATGGCCCTGTGGCAGCGGCATTCTCCTGAGAGACCAAAGCCTTAGGCCTTTGTTTCCACTGTCATTAGCTAGGGGCTGGGACGATCACACTGAATTCTCCTCAGGAGTTCCTTCCTCTGTAGGTTGTGACAACCTCATCTCCAAAGCCAACGAAGACTTTCAGATGTACCTGAGCTTTCTTATGTCTGTACCCAATCCTTAACTTCTTAGCAGTAATTAGAGAGGTCACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269-12-12,13-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGGGAAAGTTTGCCT
R:
TGTCGGACTCTTCTGTGAGCA
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types