MmuALTD1010640-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024759 | Atl3
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7494554-7509562:+
Coord C1 exon
chr19:7494554-7494657
Coord A exon
chr19:7494658-7494661
Coord C2 exon
chr19:7509348-7509562
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTTTCCTAAATGGGCATAGGTG
3' ss Score
4.56
Exon sequences
Seq C1 exon
GGCAGCCTCAACCCGCTCCTGTCTTCTCTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCTCAGCGAACTGCAGCGGTGGCATCGAGAGGA
Seq A exon
GCAG
Seq C2 exon
GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0226314=GBP=PU(18.5=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGGCTCCATGTTGT
R:
AAACAACCTGCACTGGACCAG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types