MmuALTD1010890-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5740881-5742562:+
Coord C1 exon
chr19:5740881-5740981
Coord A exon
NA
Coord C2 exon
chr19:5741335-5742562
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TTTCTGCTCTTCTTCTTGAGGCC
3' ss Score
2.27
Exon sequences
Seq C1 exon
TACTAAGTTCTTTTGAGTCAGACACTGGATCCTGGGGCTTCCTAGCACGTTCTCACAGTATTGTCCAGATCCGGGACACCACAGCCTCCCCTTTCAGACCA
Seq A exon
NA
Seq C2 exon
GCCACAGGGTTCTCCCCGGCCAGTAAACCCTGGCCAGAAGGTGCTCTCTCCTGCTTAAATCCTTTCCTTCGAGAGAAGACAGGACCAGGAATAAGGACCCATGACTTCAGGGCTTCGAGAACCCCTACATGTACAAAGGCCAATGGGCAAAAGTTAACAGACCTCTGATCCTCCAAGCAAGGACCATCTGCCTCGGTTTCCCCATTTTGACCAGGTGGAAAAGTAGTTGGGCGGGGGAGGTGTGCACAGGCCTCTGCACCCCGCCCGGAGGAATCTGGCGGAGTCCCCAGGTGAGGATTCTTCTGGAAAGAACCCAGGTCGGTTCCTGCGCGGGGCGGGCACCTAGGGGGCTGCCCCCACTCCAACCGGCGCCCTCCCTGCCGCACATCGTCGCTTCTCCGGGCAGCAGCGAAAGACGCTTGAACCAGAAGGAAAAAGAGAGAGGAGAAAAAAAAATTGTCTCCCTGGCCCCGGGCCAGCGTCCCAGCCCCCCTCGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.296
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTAGCACGTTCTCACA
R:
ACCTTCTGGCCAGGGTTTACT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types