MmuALTD1011813-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25942267-25942823:-
Coord C1 exon
chr17:25942794-25942823
Coord A exon
chr17:25942495-25942793
Coord C2 exon
chr17:25942267-25942396
Length
299 bp
Sequences
Splice sites
5' ss Seq
TGTGTGTGT
5' ss Score
-1.13
3' ss Seq
CCTTGCTTTTGCTCCTTTAGGGT
3' ss Score
11.8
Exon sequences
Seq C1 exon
CTCCAACAGCACTCTGGGCCCAACAGAGAG
Seq A exon
GTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGGCACATAGCAAGGGCAGGTCCTCTACTGGACACTCCCTGTTTTGAAAGATACCTTCAGTTTTCCCTTCAATCCAGGTCCAAACCACTTTTGAGCACTTAGGTGGGGTGCTGGGACGGTTCTGGGTAGCACAGGTTCTTTCATACCCTTCCATTCAAGACAGGAAAACAGTAGCCTTTCCTCCCATGTTACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Seq C2 exon
GGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAACACACATGTCACTCCTGCAGGCTAAATCAATATGCCCTGTTCATTATGTTGTGGGGGATTAATGGACAATGAAAGAAACTTTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-1-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACAGCACTCTGGGC
R:
AGCAAAGTTTCTTTCATTGTCCA
Band lengths:
159-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types