MmuALTD1012511-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:87192214-87192641:+
Coord C1 exon
chr1:87192214-87192291
Coord A exon
chr1:87192292-87192323
Coord C2 exon
chr1:87192486-87192641
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGAG
5' ss Score
-10.48
3' ss Seq
TTATGGTCTCCATCCCACAGCAA
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCCTGGGTAGACAGCCGTCTACAGTGGGATGCCAACGACTTCGGGAACATCACTGTCCTGCGCCTGCCCCCTGACATG
Seq A exon
GTGTGGCTACCAGAGATTGTACTGGAGAACAA
Seq C2 exon
CAATGATGGCTCGTTCCAGATTTCTTATGCCTGCAATGTGCTTGTCTATGACTCGGGCTATGTGACCTGGCTGCCGCCCGCCATCTTCCGCTCCTCCTGCCCCATCTCAGTCACCTACTTCCCTTTCGACTGGCAGAACTGCTCCCTCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.2=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(23.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGTGGGATGCCAACGAC
R:
GCCCGAGTCATAGACAAGCAC
Band lengths:
118-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types