MmuALTD1012751-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133103353-133103907:+
Coord C1 exon
chr1:133103353-133103434
Coord A exon
chr1:133103435-133103615
Coord C2 exon
chr1:133103801-133103907
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TGTTTCCTTTATTTCTGCAGATG
3' ss Score
11.15
Exon sequences
Seq C1 exon
TGTGATCTGGTGTATACTTTCTTCCACCCCCTGCCCCGAGATGAGAAGGCTTCAGGCCCCAGCCCAGCTCCGAAGTCCTCAG
Seq A exon
GTACAGCACCTTCCTGGTGGCACAGCACCTTCCTGGTGGCAGTCCTGCCAAACCATAGCCCCACCTCTTTGGCAATCCTCTTTCCTGTTCAGTTGTTTACTTGGCCCAGGACTCAGGTTTTCCATCCGGGCTGTGGTGTCCACAGCTCTACGGCTGGGTTCCCTTGGGGACGGCTATTCAG
Seq C2 exon
ATGGGACGTGGGCCCGGCCGGTTGGGAAGGTCGGTGGGGAGGTGAAGCTGTCTATCTCCTACAAAAACAACAAACTCTTCATCATGGTGATGCATATTCGGGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-55-50,56-50-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0078719=PX=PD(8.8=35.7)
A:
NA
C2:
PF0016825=C2=PU(11.1=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGGTGTATACTTTCTTCCACC
R:
AAGCCCCGAATATGCATCACC
Band lengths:
186-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types