MmuALTD1013239-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026805 | Barhl1
Description
BarH-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1859288]
Coordinates
chr2:28915214-28916347:-
Coord C1 exon
chr2:28916310-28916347
Coord A exon
chr2:28916181-28916309
Coord C2 exon
chr2:28915214-28916007
Length
129 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GTGTTTCTTCTGTGCCTAAGGGA
3' ss Score
5.96
Exon sequences
Seq C1 exon
GAAGTGGGGGTGGCGGCGAAGGCGCGCGCGGAGGACAG
Seq A exon
GTGAGAGCTGCGGTGGGAGCCGCAGGGCGCTGTCCACGGTGCTGGCGGGGCCGAGCAGGAGCTCCGGGGCCAGGTGGGGCTGCTCGATCCCGGGGCCGCTGTCGCTGTCCGCGGTGCTGAGGCCTCCAG
Seq C2 exon
GGATCCTCGGGCCGTTCTTCTACCCTTTGGCTCTCCCCAACTTGGCGCGCCCTCCTCCCATTCCTCCTGACACTCCCACCACCACCCCCCCTCGGCTCGGCGGCTCGGCGCGGTGCTGCAGAAGACGCGTTGAGCCCTTTTGGATGTAATGCGCAGAGGAGGTTGGCCCAGAGCTCCCGGGCTCCCCCAAGGCTGAACTCCGTCCAAGGTGCCCACAGGCTCCCTGCCCGCCTTCCCCATGCCAGCCCGCAGCTAGGGGCAGGGGCAGCGGCGGCTGGGGTTGGGGGTGGGTGGGGAGCTTTTGGGGAGGACAGGTTGCAGCTTGGCTATGGAAGGCTCTAATGGCTTTGGGATTGACTCCATTCTCTCCCACCGAGCGGGCAGCCCCGCCCTTCCCAAGGGGGACCCCTTGCTTGGGGACTGCCGTTCACCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGTAGCGACTGCTCTTCACCAGCCTCGCCCGGAAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026805-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.801
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types