MmuALTD1013448-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26319773-26322635:+
Coord C1 exon
chr2:26319773-26320026
Coord A exon
chr2:26320027-26320037
Coord C2 exon
chr2:26322414-26322635
Length
11 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
GGTATTCCTTCTCTGCCTAGGAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGAGCTGTTGGAGAGCTCGGGGTCTCCTGTAGCCTAGCCTGAAGATCCTGAGATTGGCGTGTCCCCTGGGACTTTTGCCAGAGCTCTGTGATGCTGGCTTCTGCTATGGAGGGCCAGCCTCTGGCCCTGAGCTTGGCAGAGAAGGCTGTGTGCAAGGTGGTATATGGTGCCCCTCGCCCTCGCCCATTGCTGCTGCCCGTGGGCCTGGAGCTGTGGCTGTATGTACAGAAGATGCGTAACCTCCAGAGAAAGAG
Seq A exon
GTGGGGACCAG
Seq C2 exon
GATGGAGGCCTCCTGTCTAGAGCTGGCCCTGGAAGGGGAGCGGCTGTGCAAGGCGGGGGACTTCAAGGCAGGTGTGGCTTTCTTCGAGGCTGCTGTGCAGGTGGGCACTGAGGACCTGAAGACACTGAGTGCCATCTACAGCCAGCTGGGCAATGCCTACTTCTACCTGAAGGAGTATGCCCGGGCCCTGCAGTTCCACAAACATGACTTGCTGCTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-3-3,4-3,5-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTAACCTCCAGAGAAAGAG
R:
GAAGAAAGCCACACCTGCCTT
Band lengths:
107-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types