MmuALTD1013461-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25609431-25609793:-
Coord C1 exon
chr2:25609678-25609793
Coord A exon
chr2:25609625-25609677
Coord C2 exon
chr2:25609431-25609541
Length
53 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
GCTGCTCCTCTGACCCACAGAAA
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTTTAACTCTATCCAGAAGAAGATGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGACAG
Seq A exon
GTATTGACAACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAG
Seq C2 exon
AAAGAAATAGCAGTCTCTAACACTCTTGATGTGTACGGCAAGCTGGATTATTGTGAGGGAAAGCTTATCTACCTGGCTGAGCGCATGCAAACGTTGTCCAGAAATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-17-21,18-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGCCCAAAACAACATGA
R:
CGCTCAGCCAGGTAGATAAGC
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types