MmuALTD1016118-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35044357-35044849:+
Coord C1 exon
chr5:35044357-35044531
Coord A exon
NA
Coord C2 exon
chr5:35044764-35044849
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
3' ss Seq
ACTCCCTTGTCTGCTTCCAGGAA
3' ss Score
10.91
Exon sequences
Seq C1 exon
TTCCCACAGAGCACTGCTTCCTGGGAAATGGTACAGAGTACCGAGGCGTGGCCAGCACCGCTGCCTCGGGCCTGAGCTGCCTGGCCTGGAATTCTGACCTGCTCTACCAGGAGCTGCACGTGGACTCAGTGGCTGCTGCTGTCCTGCTTGGCCTGGGCCCTCACGCTTACTGCCG
Seq A exon
NA
Seq C2 exon
GAACCCAGACAAGGATGAGAGGCCTTGGTGCTATGTGGTGAAGGACAACGCACTGTCGTGGGAGTATTGCCGCCTGACAGCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-12-18,13-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
NA
C2:
PF0005113=Kringle=PD(34.1=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGCTTCCTGGGAAATG
R:
CTGTCAGGCGGCAATACTCC
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types