Special

MmuALTD1016246-2/2 @ mm10

Alternative 5'ss

Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36629657-36673242:-
Coord C1 exon
chr5:36672748-36673242
Coord A exon
chr5:36672744-36672747
Coord C2 exon
chr5:36629657-36629791
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
CTGGTGCAATATCATTGCAGGAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GGACTGCCAGAGACTGACATTGCCTCAATGTGAAATGAAAGTTGAAAACCTCATCTCCTTGTGTGTTGCTATCATGGTGTTGATTCACTGGTCATGCCTGAAGAGGGAAATTGTGTTGTAGAGAGCTGACTGCTGCGCGGTCACTGCCTATCCTCCATGTTCAGCTCCTCTCCTTTCTGCTGGAGTGAAATCCTCTCCGGATTCCAACAGAACGTCCACTGTAGAAAATGCTTTGCATTTTAAGAATGTCAGCAACCTAAGTTCATGCGCCCTGTCTGTACAGTTGTTGTGGATGGTTTGCCATCTGAAAGCACCTCAAGTTCTTATCCAGGCCCTGTGTCTGTTTCTGACATGTCGCTGCTTCATGCATTGGGCCCAGTGCAAACCTGGCTGGGACAAGAGCTGGAGAAATGTGGCATTGATGCCATGATTTATTCACGGTATATCCTCAGTCTTCTGCTGCATGACAGCTATGACTACGACCTGCAGGAACAG
Seq A exon
GTAG
Seq C2 exon
GAGAATGACATCTTGAGCTGGGAGAAAGGAGCTTATAAGAAATGGGGAAGGAGTAAGAAGAAGTGTTCTGATCTAACGCTGGAGGAGATGAAAAAGCAGGCTGCTGTCCAGTGTCTGCGCTCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-9-9,10-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence inclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.042 A=NA C2=0.014
Domain overlap (PFAM):

C1:
PF153761=DUF4603=PU(4.2=70.1)
A:
NA
C2:
PF153761=DUF4603=FE(3.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACGACCTGCAGGAACA
R:
CCTCCAGCGTTAGATCAGAACAC
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types