MmuALTD1016748-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120648810-120649534:+
Coord C1 exon
chr5:120648810-120648910
Coord A exon
chr5:120648911-120648959
Coord C2 exon
chr5:120649388-120649534
Length
49 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
ACAGCGTGCTTGGCCCGCAGCTG
3' ss Score
7.78
Exon sequences
Seq C1 exon
TTAATTGGAGACGAAGAGAAGATGCAAGGGGATGTTCGAGGTCCCTCCCTCCACTCGCATCAGACCCCCAGGGAGCGTGCGCCGCCTGCCGCCCAGAGAGA
Seq A exon
GTACTGTTCCGGGACCCCGAGGCTGGTGTTGGGGTGGCAGGTGGAGGAG
Seq C2 exon
CTGATGACATGTAGGGTCACCTCCTGGTCCAGCCTCAGAACCTCGGCAGACTCCTTGCCTGGAAAGTTTGGGACTGTGCGACATGGCCAAGAGCGGCTCGCTGAGTATCCGCGTGGTGGAGGGACGAGCACTGCCCGCCAAGGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016825=C2=PU(22.4=68.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAAGGGGATGTTCGAGG
R:
AAGGAGTCTGCCGAGGTTCTG
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types