Special

MmuALTD1018302-2/2 @ mm10

Alternative 5'ss

Gene
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119534234-119534915:+
Coord C1 exon
chr7:119534234-119534377
Coord A exon
chr7:119534378-119534414
Coord C2 exon
chr7:119534762-119534915
Length
37 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTTCCTCTCATTTTTGGCAGGAG
3' ss Score
8.59
Exon sequences
Seq C1 exon
AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTCACCAGTGGAACCACAGGGGCCCCCAAGATGGTGGAACATTCCCAGTCCAGCTATGGATTGGGTTTTGTGGCCAGTGGAAG
Seq A exon
GTATTGGAAGAGTATGTCTCGGAGGTCTGAAAACAAG
Seq C2 exon
GAGGTGGATGGCCTTGACTGAGTCTGACATATTCTGGAACACAACTGACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTCTCTGCCTGGTCCAATGGAGCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAACTATTCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-15-19,16-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence inclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.011 A=NA C2=0.034
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(22.4=94.8)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATTGGGTTTTGTGGCCA
R:
TCCATTGGACCAGGCAGAGAA
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types