MmuALTD1018796-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031503 | Col4a2
Description
collagen, type IV, alpha 2 [Source:MGI Symbol;Acc:MGI:88455]
Coordinates
chr8:11441880-11443232:+
Coord C1 exon
chr8:11441880-11441996
Coord A exon
NA
Coord C2 exon
chr8:11443071-11443232
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACTGTGACTTTTACCCTCAGGCT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGGAACGTGGCCCAGCTGGAAGCCCAGGACTTCAGGGTTTCCCTGGTATCTCTCCACCATCCAACATCTCTGGGTCACCTGGTGATGTAGGCGCACCAGGAATATTTGGCTTGCAAG
Seq A exon
NA
Seq C2 exon
GCTACCAAGGCCCTCCAGGACCACCTGGGCCAAACGCACTTCCTGGAATCAAAGGAGATGAGGGGAGCTCTGGAGCTGCAGGATTCCCTGGACAGAAAGGATGGGTTGGGGACCCAGGGCCCCAGGGCCAGCCTGGTGTACTCGGTCTTCCGGGGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031503-56-71,57-71-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(34.3=85.0),PF0139113=Collagen=PU(22.4=42.5)
A:
NA
C2:
PF0139113=Collagen=PD(74.3=94.5),PF0139113=Collagen=PU(19.0=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGGCCCAGCTGGAA
R:
CTTTCTCCCCCGGAAGACC
Band lengths:
277-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types