MmuALTD1020425-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032698 | Lmo2
Description
LIM domain only 2 [Source:MGI Symbol;Acc:MGI:102811]
Coordinates
chr2:103970244-103970712:+
Coord C1 exon
chr2:103970244-103970260
Coord A exon
chr2:103970261-103970365
Coord C2 exon
chr2:103970493-103970712
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAAG
5' ss Score
3.39
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
Exon sequences
Seq C1 exon
CCCCGACCCCGGCGAAG
Seq A exon
GTGCGAGGGGCTCGGGGCGACCGGGCGGAGCCGGCTACTGCGCGCGATCGGGACCGGGCGGCGGCGGCGGCGGCTGTGGTGACGGCAGCGGGACCGGGATGGAAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032698-3-11,4-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.642
Domain overlap (PFAM):
C1:
PF124483=Milton=PU(2.4=66.7)
A:
NA
C2:
PF124483=Milton=FE(88.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types