MmuALTD1020517-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5154009-5156240:+
Coord C1 exon
chr6:5154009-5154207
Coord A exon
chr6:5154208-5154318
Coord C2 exon
chr6:5156121-5156240
Length
111 bp
Sequences
Splice sites
5' ss Seq
AATGTGCTA
5' ss Score
-9.58
3' ss Seq
GGTTGTATTCATTTTGACAGAAT
3' ss Score
4.73
Exon sequences
Seq C1 exon
AATCTTCAGAAGCAAGTTGGAGAACTGGAAAAGCAAACCAAGCTCTGCAGCTCAGGCCTCCACCCGCTCTCCTTGCATGCCTTTCTCATGGTTTAATGAAAGCCGGAAAGGATCCTATTCCTTCAGGAACCTGCCTTCAGCTCCAAGCCCCCTTCAGCCTTCTCCTGAGACTCAAGTCTCAGATAAAACAGGGTCCAAG
Seq A exon
GTAGACAACAGCGGACTATAAAAGCCGACAAGAAAGTCCCCCAATCCTGTCTCTTCAGTTTTTGGAAAGCCTTCTCAACTTGCGCGTGCACCCTGGATCTGATGAACCAAT
Seq C2 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-44-54,46-54,47-54-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTTGCATGCCTTTCT
R:
TCATCCGAGGACAGTGCCAAG
Band lengths:
253-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types