MmuALTD1021783-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75212792-75215259:+
Coord C1 exon
chr9:75212792-75212976
Coord A exon
chr9:75212977-75213074
Coord C2 exon
chr9:75215085-75215259
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTTTTATTTTTGGCATAGGTA
3' ss Score
8.07
Exon sequences
Seq C1 exon
TCTCAGGTATGCTAGAGCATGAAACAATTCAGGGCGTATCTGGGGTGAAGCCCACAGGGCTCAGAAAACGAACCTCCAGTATCGCAGATGAGGGCACCTACACACTGGACTCCATCCTTCGGCAGCTCAACTCCTTCCACTCAGTCATGTGTCAGCATGGCATGGACCCGGAGCTAATCAAGCAG
Seq A exon
GTAGTCAAACAGATGTTCTACATTGTGGGCGCCATCACCCTAAACAACCTCCTCCTGCGCAAGGACATGTGCTCCTGGAGCAAGGGCATGCAGATCAG
Seq C2 exon
GTACAATGTCAGTCAACTGGAAGAATGGCTACGTGACAAGAATCTAATGAACAGTGGGGCCAAGGAGACTCTGGAACCTCTTATCCAGGCCGCTCAGCTTTTGCAAGTGAAAAAGAAAACTGACGATGACGCAGAAGCCATCTGTTCCATGTGCAACGCCCTGACCACGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-72-70,73-70-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100),PF0146614=Skp1=PU(69.3=88.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCATGTGTCAGCATGGC
R:
GCTTCTGCGTCATCGTCAGTT
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types