MmuALTD1021811-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034623 | Prss55
Description
protease, serine 55 [Source:MGI Symbol;Acc:MGI:1918287]
Coordinates
chr14:64081659-64085408:-
Coord C1 exon
chr14:64085311-64085408
Coord A exon
chr14:64085214-64085310
Coord C2 exon
chr14:64081659-64081851
Length
97 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GCGGTTTTCTGTTTCTGCAGAGT
3' ss Score
8.89
Exon sequences
Seq C1 exon
TATTCTGTCAGCCTGGCCTCCAACACACAGCACAGCCAGAGCCATGATCCTGCCCTCCATCCTGCTACTTGTTGCCCACACCCTGGAAGCAAATGTTG
Seq A exon
GTATGTGGACTCCTCTCCCTCTGGCCAGAGCTGCTGACCCGGGCAGGTCAGTCAGGATACCTGCTCTCCTCGCCTCCCTTCATCCTATCAATATGTG
Seq C2 exon
AGTGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGGGTGAGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACCACCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATCCTCACCGTGGCCCACTGCTTCTATGCTCAGGAGCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034623-5-6,6-6,7-6-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.1=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCCTGGAAGCAAATGT
R:
CACTCACTGAGAATGGAGCCG
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types